| CD1 |
| 1. Pull Me Under | not rated | 8:12 |
| 2. Another Day | not rated | 4:25 |
| 3. Take The Time | not rated | 8:21 |
| 4. Surrounded | not rated | 5:29 |
| 5. Metropolis - Part I 'The Miracle And The Sleeper' | not rated | 9:31 |
| 6. Under A Glass Moon | not rated | 7:03 |
| 7. Wait For Sleep | not rated | 2:32 |
| 8. Learning To Live | not rated | 11:30 |
| 57:07 |
| CD2 |
| 1. 6:00 | not rated | 5:31 |
| 2. Caught In A Web | not rated | 5:28 |
| 3. Innocence Faded | not rated | 5:42 |
| 4. Erotomania | not rated | 6:44 |
| 5. Voices | not rated | 9:53 |
| 6. The Silent Man | not rated | 3:46 |
| 7. The Mirror | not rated | 6:46 |
| 8. Lie | not rated | 6:33 |
| 9. Lifting Shadows Off A Dream | not rated | 6:05 |
| 10. Scarred | not rated | 10:58 |
| 11. Space-Dye Vest | not rated | 7:30 |
| 1:15:00 |
| CD3 |
| 1. New Millennium | not rated | 8:20 |
| 2. You Not Me | not rated | 4:58 |
| 3. Peruvian Skies | not rated | 6:43 |
| 4. Hollow Years | not rated | 5:53 |
| 5. Burning My Soul | not rated | 5:29 |
| 6. Hell's Kitchen | not rated | 4:16 |
| 7. Lines In The Sand | not rated | 12:05 |
| 8. Take Away My Pain | not rated | 6:03 |
| 9. Just Let Me Breathe | not rated | 5:28 |
| 10. Anna Lee | not rated | 5:51 |
| 11. Trial Of Tears (I. It's Raining/ II. Deep In Heaven/ III. The Wasteland) | not rated | 13:06 |
| 1:18:18 |
| CD4 |
| 1. Scene One: Regression | not rated | 2:06 |
| 2. Scene Two: I. Overture 1928 | not rated | 3:37 |
| 3. Scene Two: II. Strange Deja Vu | not rated | 5:12 |
| 4. Scene Three: I. Through My Words | not rated | 1:02 |
| 5. Scene Three: II. Fatal Tragedy | not rated | 6:49 |
| 6. Scene Four: Beyond This Life | not rated | 11:22 |
| 7. Scene Five: Through Her Eyes | not rated | 5:29 |
| 8. Scene Six: Home | not rated | 12:53 |
| 9. Scene Seven: I. The Dance of Eternity | not rated | 6:13 |
| 10. Scene Seven: II. One Last Time | not rated | 3:46 |
| 11. Scene Eight: The Spirit Carries On | not rated | 6:38 |
| 12. Scene Nine: Finally Free | not rated | 11:59 |
| 1:17:12 |
| CD5 |
| 1. The Glass Prison | not rated | 13:52 |
| 2. Blind Faith | not rated | 10:21 |
| 3. Misunderstood | not rated | 9:32 |
| 4. The Great Debate | not rated | 13:45 |
| 5. Disappear | not rated | 6:45 |
| 54:18 |
| CD6 |
| 1. I. Overture | not rated | 6:50 |
| 2. II. About To Crash | not rated | 5:50 |
| 3. III. War Inside My Head | not rated | 2:08 |
| 4. IV. The Test That Stumped Them All | not rated | 5:03 |
| 5. V. Goodnight Kiss | not rated | 6:17 |
| 6. VI. Solitary Shell | not rated | 5:47 |
| 7. VII. About To Crash (Reprise) | not rated | 4:04 |
| 8. VIII. Losing Time / Grand Finale | not rated | 5:59 |
| 42:02 |
| CD7 |
| 1. As I Am | not rated | 7:47 |
| 2. This Dying Soul | not rated | 11:24 |
| 3. Endless Sacrifice | not rated | 11:26 |
| 4. Honor Thy Father | not rated | 10:12 |
| 5. Vacant | not rated | 3:00 |
| 6. Stream Of Consciousness | not rated | 11:16 |
| 7. In The Name Of God | not rated | 14:14 |
| 1:09:22 |
| CD8 |
| 1. The Root Of All Evil | not rated | 8:07 |
| 2. The Answer Lies Within | not rated | 5:43 |
| 3. These Walls | not rated | 7:06 |
| 4. I Walk Beside You | not rated | 5:05 |
| 5. Panic Attack | not rated | 7:16 |
| 6. Never Enough | not rated | 7:30 |
| 7. Sacrificed Sons | not rated | 10:55 |
| 8. Octavarium | not rated | 23:59 |
| 1:15:46 |
| CD9 |
| 1. In The Presence Of Enemies - Part I | not rated | 9:00 |
| 2. Forsaken | not rated | 5:35 |
| 3. Constant Motion | not rated | 6:55 |
| 4. The Dark Eternal Night | not rated | 8:51 |
| 5. Repentance | not rated | 10:45 |
| 6. Prophets Of War | not rated | 6:00 |
| 7. The Ministry Of Lost Souls | not rated | 14:57 |
| 8. In The Presence Of Enemies - Part II | not rated | 16:38 |
| 1:18:44 |
| CD10 |
| 1. A Nightmare To Remember | not rated | 16:10 |
| 2. A Rite Of Passage | not rated | 8:36 |
| 3. Wither | not rated | 5:26 |
| 4. The Shattered Fortress | not rated | 12:49 |
| 5. The Best Of Times | not rated | 13:07 |
| 6. The Count Of Tuscany | not rated | 19:17 |
| 1:15:27 |
| CD11 |
| 1. On The Backs Of Angels | not rated | 8:42 |
| 2. Build Me Up, Break Me Down | not rated | 6:59 |
| 3. Lost Not Forgotten | not rated | 10:11 |
| 4. This Is The Life | not rated | 6:57 |
| 5. Bridges In The Sky | not rated | 11:01 |
| 6. Outcry | not rated | 11:24 |
| 7. Far From Heaven | not rated | 3:56 |
| 8. Breaking All Illusions | not rated | 12:25 |
| 9. Beneath The Surface | not rated | 5:26 |
| 1:17:04 |
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