| 1. James Horner, James Horner - Main Title (10) | not rated | 3:13 |
| 2. James Horner, James Horner - Surprise On Ceti Alpha V | not rated | 0:47 |
| 3. James Horner, James Horner - Khan's Pets | not rated | 4:23 |
| 4. James Horner, James Horner - The Eels of Ceti Alpha V / Kirk In Space Shuttle | not rated | 3:58 |
| 5. James Horner, James Horner - Enterprise Clears Moorings | not rated | 3:38 |
| 6. James Horner, James Horner - Chekov Lies | not rated | 0:44 |
| 7. James Horner, James Horner - Spock | not rated | 1:13 |
| 8. James Horner, James Horner - Kirk Takes Command / He Tasks Me | not rated | 2:11 |
| 9. James Horner, James Horner - Surprise Attack | not rated | 5:13 |
| 10. James Horner, James Horner - Kirk's Explosive Reply | not rated | 4:06 |
| 11. James Horner, James Horner - Inside Regula One | not rated | 1:52 |
| 12. James Horner, James Horner - Brainwashed | not rated | 1:28 |
| 13. James Horner, James Horner - Captain Terrell's Death | not rated | 2:02 |
| 14. James Horner, James Horner - Buried Alive | not rated | 1:00 |
| 15. James Horner, James Horner - The Genesis Cave | not rated | 1:15 |
| 16. James Horner, James Horner - Battle In The Mutara Nebula | not rated | 8:13 |
| 17. James Horner, James Horner - Enterprise Attacks Reliant | not rated | 1:35 |
| 18. James Horner, James Horner - Genesis Countdown | not rated | 6:41 |
| 19. James Horner, James Horner - Spock and Kirk | not rated | 1:58 |
| 20. James Horner, James Horner - Amazing Grace | not rated | 1:30 |
| 21. James Horner, James Horner - Epilogue / End Title | not rated | 8:44 |
| 22. Craig Huxley, Craig Huxley - Genesis Project (Craig Huxley) | not rated | 3:15 |
| 23. James Horner, James Horner - The Eels of Ceti Alpha V (Discrete) | not rated | 2:40 |
| 24. James Horner, James Horner - Kirk In Space Shuttle (Discrete) | not rated | 1:21 |
| 25. James Horner, James Horner - Kirk Takes Command (Proposed Album Take) | not rated | 1:44 |
| 26. James Horner, James Horner - Buried Alive (Alternate Take) | not rated | 1:03 |
| 27. James Horner, James Horner - Amazing Grace (Alternate Version) | not rated | 1:34 |
| 28. James Horner, James Horner - Epilogue - End Title (Alternate Version) | not rated | 7:36 |
| 29. James Horner, James Horner - Wild Orchestra | not rated | 1:38 |
| 30. James Horner, James Horner - Amazing Grace (Alternate Bagpipes) | not rated | 1:31 |
| 31. James Horner, James Horner - Theme of Star Trek II (Edited End Title) | not rated | 4:51 |
| 1:32:57 |
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