| 1. Autobots | not rated | 3:22 |
| 2. Decepticons | not rated | 3:34 |
| 3. Cybertron | not rated | 2:03 |
| 4. Optimus Steps In | not rated | 4:21 |
| 5. The Ark | not rated | 3:15 |
| 6. Optimus and Elita-1 (Elita's Theme) | not rated | 2:13 |
| 7. We Are Not Decepticons | not rated | 2:09 |
| 8. Traitor | not rated | 2:36 |
| 9. Metal Vortex | not rated | 2:44 |
| 10. Megatron's Speech | not rated | 3:43 |
| 11. Alpha Trion Protocols | not rated | 4:10 |
| 12. Sea of Rust / Virus Attack | not rated | 4:13 |
| 13. The Ark Takes Flight | not rated | 4:03 |
| 14. Battle of The Space Bridge | not rated | 3:08 |
| 15. For Cybertron | not rated | 4:00 |
| 16. A New Leader | not rated | 1:23 |
| 17. Siege End Titles (Autobots Theme Reprise) | not rated | 1:20 |
| 52:17 |
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